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Cell Segmentation Explorer

Bin2Cell Explorer is a TissUUmaps plugin that brings the interactive features from the original Bin2Cell_demo.ipynb notebook into the viewer. It lets scientists explore Bin2Cell-expanded labels on top of H&E imagery, switch between gene-expression and observation overlays, and export the rendered regions.

🌐 Live Documentation | 🔬 Interactive Demo

Overview

Default loading state

The plugin interface with dataset loading controls.

Tool in use

Exploring cell segmentation overlays on H&E tissue imagery.

Core Features